MedCase-Structured

MedCase-Structured: A Text-to-FHIR Dataset for Benchmarking Diagnostic Reasoning in Clinically Realistic EHR Settings

The paper introduces a pipeline for converting unstructured clinical text into HL7 FHIR R4 bundles, enabling evaluation of LLMs in realistic electronic health record settings. Applied to the MedCaseReasoning dataset, it produces MedCase-Structured, a synthetic benchmark achieving valid FHIR generation for 82.5% of cases. Key finding: LLMs show consistently lower diagnostic accuracy on structured FHIR inputs compared to plain text, underscoring the gap between standard benchmarks and real-world clinical deployment conditions.